Pseudomonas_E lini
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas_E; s__Pseudomonas_E lini
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas fluorescens
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas fluorescens group; s__Pseudomonas fluorescens
NCBI Strain Identifiers PA3G8
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001042905.1)
Genome Characteristics
CheckM Completeness 99.66%
CheckM Contamination 0.24%
CheckM Strain Heterogeneity 60.0
5S Count 5
16S Count 5
23S Count 5
tRNA Count 20
Contig Count 53
N50 Contigs 233,515 bp
Longest Contig 748,147 bp
Scaffold Count 9
N50 Scaffolds 3,560,787 bp
Longest Scaffold 3,560,787 bp
Genome Size 6,391,599 bp
Protein Count 5,680
Coding Density 87.29%
GC Percentage 58.90%
Ambiguous Bases N/A
GTDB representative GCA_001042905.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name PseuPA3G8
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03198228
Country France: Pas-de-calais
Date 2014-12-11
Genbank Assembly Accession GCA_000800625.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source potato rhizosphere
Latitude Longitude None
Molecule Count N/A
CDS Count 5,724
Refseq Category na
Seq Rel Date 2014/12/11
Spanned Gaps 44
Species Taxid 294
SSU Count 5
Submitter CNRS - UPR2355
Taxid 294
Total Gap Length 42699
Translation Table 11
tRNA Count (total) 68
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JBOO00000000.1