Pseudomonas_E brassicacearum
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas_E; s__Pseudomonas_E brassicacearum
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas brassicacearum
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas brassicacearum
NCBI Strain Identifiers PA1G7
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000194805.1)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.57%
CheckM Strain Heterogeneity 80.0
5S Count 5
16S Count 5
23S Count 2
tRNA Count 20
Contig Count 53
N50 Contigs 301,959 bp
Longest Contig 814,937 bp
Scaffold Count 8
N50 Scaffolds 3,994,340 bp
Longest Scaffold 3,994,340 bp
Genome Size 6,789,435 bp
Protein Count 6,037
Coding Density 87.66%
GC Percentage 60.91%
Ambiguous Bases N/A
GTDB representative GCA_000194805.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name PseuPA1G7_1.0
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03196958
Country France: Finistere
Date 2014-12-11
Genbank Assembly Accession GCA_000800585.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source potato rhizosphere
Latitude Longitude None
Molecule Count N/A
CDS Count 6,110
Refseq Category na
Seq Rel Date 2014/12/11
Spanned Gaps 45
Species Taxid 930166
SSU Count 4
Submitter CNRS - UPR2355
Taxid 930166
Total Gap Length 50053
Translation Table 11
tRNA Count (total) 56
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JBON00000000.1