Bifidobacterium kashiwanohense_A
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinobacteria; o__Actinomycetales; f__Bifidobacteriaceae; g__Bifidobacterium; s__Bifidobacterium kashiwanohense_A
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Bifidobacteriales; f__Bifidobacteriaceae; g__Bifidobacterium; s__Bifidobacterium kashiwanohense
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Bifidobacteriales; f__Bifidobacteriaceae; g__Bifidobacterium; s__Bifidobacterium kashiwanohense; x__Bifidobacterium kashiwanohense PV20-2
NCBI Strain Identifiers PV20-2
GTDB Type Material Designation not type material
GTDB Representative of Species True
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.98%
CheckM Strain Heterogeneity 25.0
5S Count 6
16S Count 5
23S Count 5
tRNA Count 20
Contig Count 1
N50 Contigs 2,370,978 bp
Longest Contig 2,370,978 bp
Scaffold Count 1
N50 Scaffolds 2,370,978 bp
Longest Scaffold 2,370,978 bp
Genome Size 2,370,978 bp
Protein Count 2,002
Coding Density 86.74%
GC Percentage 56.12%
Ambiguous Bases 0
GTDB representative of species True
NCBI Metadata
Assembly Level Complete Genome
Assembly Name ASM80045v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03253090
Country Kenya
Date 2014-12-9
Genbank Assembly Accession GCA_000800455.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source fecal sample
Latitude Longitude None
Molecule Count 1
Protein Count 1,956
Refseq Category na
Seq Rel Date 2014/12/09
Spanned Gaps 0
Species Taxid 630129
SSU Count 5
Submitter ETH Zurich
Taxid 1447716
Total Gap Length 0
Translation Table 11
tRNA Count (total) 58
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master None