Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhizobiales; f__Rhizobiaceae; g__Rhizobium; s__Rhizobium lusitanum
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhizobiales; f__Rhizobiaceae; g__Rhizobium; s__Rhizobium tropici
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhizobiales; f__Rhizobiaceae; x__Rhizobium/Agrobacterium group; g__Rhizobium; s__Rhizobium tropici
NCBI Strain Identifiers YR635
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_900094565.1)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 1.42%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 54
N50 Contigs 278,700 bp
Longest Contig 619,389 bp
Scaffold Count 49
N50 Scaffolds 304,505 bp
Longest Scaffold 619,389 bp
Genome Size 7,383,882 bp
Protein Count 6,951
Coding Density 87.40%
GC Percentage 59.90%
Ambiguous Bases N/A
GTDB representative GCA_900094565.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM79992v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02787128
Country None
Date 2014-12-9
Genbank Assembly Accession GCA_000799925.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 6,959
Refseq Category na
Seq Rel Date 2014/12/09
Spanned Gaps 5
Species Taxid 398
SSU Count 1
Submitter DOE Joint Genome Institute
Taxid 398
Total Gap Length 3189
Translation Table 11
tRNA Count (total) 47
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JUHQ00000000.1