Rhizobium sp000799775
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhizobiales; f__Rhizobiaceae; g__Rhizobium; s__Rhizobium sp000799775
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhizobiales; f__Rhizobiaceae; g__Rhizobium; s__
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhizobiales; f__Rhizobiaceae; x__Rhizobium/Agrobacterium group; g__Rhizobium; s__Rhizobium sp. YR528
NCBI Strain Identifiers YR528
GTDB Type Material Designation not type material
GTDB Representative of Species True (15 genomes in species cluster)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 1.23%
CheckM Strain Heterogeneity 9.09
5S Count 1
16S Count 1
23S Count 1
tRNA Count 19
Contig Count 29
N50 Contigs 474,429 bp
Longest Contig 916,921 bp
Scaffold Count 28
N50 Scaffolds 474,429 bp
Longest Scaffold 916,921 bp
Genome Size 6,180,594 bp
Protein Count 5,854
Coding Density 87.98%
GC Percentage 61.40%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM79977v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02787161
Country None
Date 2014-12-9
Genbank Assembly Accession GCA_000799775.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,908
Refseq Category na
Seq Rel Date 2014/12/09
Spanned Gaps 1
Species Taxid 1500258
SSU Count 3
Submitter DOE Joint Genome Institute
Taxid 1500258
Total Gap Length 10
Translation Table 11
tRNA Count (total) 43
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JUHJ00000000.1