Escherichia flexneri
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers CVM N34351PS
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 99.53%
CheckM Contamination 0.25%
CheckM Strain Heterogeneity 20.0
5S Count 5
16S Count 2
23S Count 1
tRNA Count 20
Contig Count 182
N50 Contigs 119,762 bp
Longest Contig 440,447 bp
Scaffold Count 182
N50 Scaffolds 119,762 bp
Longest Scaffold 440,447 bp
Genome Size 4,947,127 bp
Protein Count 4,748
Coding Density 88.25%
GC Percentage 50.66%
Ambiguous Bases N/A
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name Escherichia coli CVM N34351PS v. 1.0
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03177645
Country USA
Date 2014-12-07
Genbank Assembly Accession GCA_000798015.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Farm
Latitude Longitude None
Molecule Count N/A
CDS Count 5,131
Refseq Category na
Seq Rel Date 2014/12/07
Spanned Gaps 0
Species Taxid 562
SSU Count 4
Submitter FDA
Taxid 562
Total Gap Length 0
Translation Table 11
tRNA Count (total) 83
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JUCX00000000.1