Escherichia flexneri
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers CVM N38795PS
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 99.62%
CheckM Contamination 0.33%
CheckM Strain Heterogeneity 0.0
5S Count 3
16S Count 1
23S Count 3
tRNA Count 19
Contig Count 202
N50 Contigs 115,333 bp
Longest Contig 348,605 bp
Scaffold Count 202
N50 Scaffolds 115,333 bp
Longest Scaffold 348,605 bp
Genome Size 5,446,884 bp
Protein Count 5,387
Coding Density 87.59%
GC Percentage 50.51%
Ambiguous Bases N/A
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name Escherichia coli CVM N38795PS v. 1.0
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03177682
Country USA
Date 2014-12-07
Genbank Assembly Accession GCA_000797715.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Farm
Latitude Longitude None
Molecule Count N/A
CDS Count 5,811
Refseq Category na
Seq Rel Date 2014/12/07
Spanned Gaps 0
Species Taxid 562
SSU Count 3
Submitter FDA
Taxid 562
Total Gap Length 0
Translation Table 11
tRNA Count (total) 84
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JUBW00000000.1