Pseudomonas aeruginosa
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas aeruginosa
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas aeruginosa
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas aeruginosa group; s__Pseudomonas aeruginosa
NCBI Strain Identifiers AZPAE12417
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001457615.1)
Genome Characteristics
CheckM Completeness 99.68%
CheckM Contamination 0.11%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 98
N50 Contigs 189,071 bp
Longest Contig 458,539 bp
Scaffold Count 85
N50 Scaffolds 189,071 bp
Longest Scaffold 458,539 bp
Genome Size 6,360,200 bp
Protein Count 5,913
Coding Density 89.61%
GC Percentage 66.32%
Ambiguous Bases 14
GTDB representative GCA_001457615.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name AZPAE12417
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03105408
Country USA: Cleveland
Date 2014-12-4
Genbank Assembly Accession GCA_000797225.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source cystic fibrosis isolate
Latitude Longitude None
Molecule Count N/A
CDS Count 6,055
Refseq Category na
Seq Rel Date 2014/12/04
Spanned Gaps 13
Species Taxid 287
SSU Count 1
Submitter AstraZeneca
Taxid 287
Total Gap Length 1418
Translation Table 11
tRNA Count (total) 57
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JTZX00000000.1