Pseudomonas aeruginosa
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas aeruginosa
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas aeruginosa
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas aeruginosa group; s__Pseudomonas aeruginosa
NCBI Strain Identifiers AZPAE12140
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001457615.1)
Genome Characteristics
CheckM Completeness 99.52%
CheckM Contamination 0.11%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 19
Contig Count 73
N50 Contigs 172,848 bp
Longest Contig 368,634 bp
Scaffold Count 54
N50 Scaffolds 211,232 bp
Longest Scaffold 503,414 bp
Genome Size 6,250,380 bp
Protein Count 5,705
Coding Density 89.79%
GC Percentage 66.58%
Ambiguous Bases 1
GTDB representative GCA_001457615.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name AZPAE12140
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03105384
Country USA: New York
Date 2014-12-4
Genbank Assembly Accession GCA_000796615.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source cystic fibrosis isolate
Latitude Longitude None
Molecule Count N/A
CDS Count 5,855
Refseq Category na
Seq Rel Date 2014/12/04
Spanned Gaps 19
Species Taxid 287
SSU Count 1
Submitter AstraZeneca
Taxid 287
Total Gap Length 2392
Translation Table 11
tRNA Count (total) 53
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JUAV00000000.1