Pseudomonas aeruginosa
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas aeruginosa
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas aeruginosa
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas aeruginosa group; s__Pseudomonas aeruginosa
NCBI Strain Identifiers AZPAE12137
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001457615.1)
Genome Characteristics
CheckM Completeness 99.68%
CheckM Contamination 0.46%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 19
Contig Count 108
N50 Contigs 225,841 bp
Longest Contig 556,059 bp
Scaffold Count 82
N50 Scaffolds 268,576 bp
Longest Scaffold 556,059 bp
Genome Size 6,304,247 bp
Protein Count 5,794
Coding Density 89.67%
GC Percentage 66.54%
Ambiguous Bases 4
GTDB representative GCA_001457615.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name AZPAE12137
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03105382
Country USA: New York
Date 2014-12-4
Genbank Assembly Accession GCA_000796585.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source cystic fibrosis isolate
Latitude Longitude None
Molecule Count N/A
CDS Count 5,928
Refseq Category na
Seq Rel Date 2014/12/04
Spanned Gaps 26
Species Taxid 287
SSU Count 1
Submitter AstraZeneca
Taxid 287
Total Gap Length 2051
Translation Table 11
tRNA Count (total) 55
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JUAX00000000.1