Pseudomonas aeruginosa
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas aeruginosa
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas aeruginosa
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas aeruginosa group; s__Pseudomonas aeruginosa
NCBI Strain Identifiers AZPAE14708
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001457615.1)
Genome Characteristics
CheckM Completeness 99.31%
CheckM Contamination 0.3%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 221
N50 Contigs 108,737 bp
Longest Contig 392,139 bp
Scaffold Count 187
N50 Scaffolds 133,569 bp
Longest Scaffold 392,139 bp
Genome Size 6,707,536 bp
Protein Count 6,374
Coding Density 89.49%
GC Percentage 66.06%
Ambiguous Bases 77
GTDB representative GCA_001457615.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name AZPAE14708
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03105486
Country Greece
Date 2014-12-4
Genbank Assembly Accession GCA_000795815.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source itra-abdominal tract infection
Latitude Longitude None
Molecule Count N/A
CDS Count 6,485
Refseq Category na
Seq Rel Date 2014/12/04
Spanned Gaps 34
Species Taxid 287
SSU Count 1
Submitter AstraZeneca
Taxid 287
Total Gap Length 1878
Translation Table 11
tRNA Count (total) 56
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JTWX00000000.1