Pseudomonas aeruginosa
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas aeruginosa
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas aeruginosa
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas aeruginosa group; s__Pseudomonas aeruginosa
NCBI Strain Identifiers AZPAE14826
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001457615.1)
Genome Characteristics
CheckM Completeness 99.68%
CheckM Contamination 0.43%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 166
N50 Contigs 164,756 bp
Longest Contig 401,422 bp
Scaffold Count 133
N50 Scaffolds 168,088 bp
Longest Scaffold 401,422 bp
Genome Size 7,108,825 bp
Protein Count 6,715
Coding Density 89.23%
GC Percentage 65.90%
Ambiguous Bases 4
GTDB representative GCA_001457615.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name AZPAE14826
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03105527
Country USA: Detroit
Date 2014-12-4
Genbank Assembly Accession GCA_000795345.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source respiratory tract infection
Latitude Longitude None
Molecule Count N/A
CDS Count 6,921
Refseq Category na
Seq Rel Date 2014/12/04
Spanned Gaps 33
Species Taxid 287
SSU Count 1
Submitter AstraZeneca
Taxid 287
Total Gap Length 3243
Translation Table 11
tRNA Count (total) 57
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JTVI00000000.1