Pseudomonas aeruginosa
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas aeruginosa
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas aeruginosa
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas aeruginosa group; s__Pseudomonas aeruginosa
NCBI Strain Identifiers AZPAE15062
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001457615.1)
Genome Characteristics
CheckM Completeness 98.98%
CheckM Contamination 0.15%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 112
N50 Contigs 199,266 bp
Longest Contig 555,527 bp
Scaffold Count 78
N50 Scaffolds 244,201 bp
Longest Scaffold 556,371 bp
Genome Size 6,481,258 bp
Protein Count 6,018
Coding Density 89.64%
GC Percentage 66.34%
Ambiguous Bases N/A
GTDB representative GCA_001457615.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name AZPAE15062
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03105759
Country Brazil: Curitiba
Date 2014-12-4
Genbank Assembly Accession GCA_000793285.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source urinary tract infection
Latitude Longitude None
Molecule Count N/A
CDS Count 6,163
Refseq Category na
Seq Rel Date 2014/12/04
Spanned Gaps 34
Species Taxid 287
SSU Count 1
Submitter AstraZeneca
Taxid 287
Total Gap Length 2858
Translation Table 11
tRNA Count (total) 58
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JTMK00000000.1