Pseudomonas aeruginosa
Isolate HQ 5S/16S/23S 18 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas aeruginosa
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas aeruginosa
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas aeruginosa group; s__Pseudomonas aeruginosa
NCBI Strain Identifiers AZPAE15048
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001457615.1)
Genome Characteristics
CheckM Completeness 99.43%
CheckM Contamination 0.82%
CheckM Strain Heterogeneity 20.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 18
Contig Count 168
N50 Contigs 131,089 bp
Longest Contig 441,050 bp
Scaffold Count 128
N50 Scaffolds 155,421 bp
Longest Scaffold 459,394 bp
Genome Size 6,924,072 bp
Protein Count 6,533
Coding Density 88.63%
GC Percentage 65.77%
Ambiguous Bases 5
GTDB representative GCA_001457615.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name AZPAE15048
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03105745
Country Germany: Munchen
Date 2014-12-4
Genbank Assembly Accession GCA_000793135.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source urinary tract infection
Latitude Longitude None
Molecule Count N/A
CDS Count 6,709
Refseq Category na
Seq Rel Date 2014/12/04
Spanned Gaps 40
Species Taxid 287
SSU Count 1
Submitter AstraZeneca
Taxid 287
Total Gap Length 5035
Translation Table 11
tRNA Count (total) 52
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JTMY00000000.1