Pseudomonas aeruginosa
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas aeruginosa
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas aeruginosa
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas aeruginosa group; s__Pseudomonas aeruginosa
NCBI Strain Identifiers AZPAE14993
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001457615.1)
Genome Characteristics
CheckM Completeness 99.11%
CheckM Contamination 0.19%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 273
N50 Contigs 64,728 bp
Longest Contig 404,962 bp
Scaffold Count 223
N50 Scaffolds 78,710 bp
Longest Scaffold 404,962 bp
Genome Size 6,914,857 bp
Protein Count 6,543
Coding Density 89.25%
GC Percentage 66.02%
Ambiguous Bases 14
GTDB representative GCA_001457615.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name AZPAE14993
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03105690
Country Spain: Madrid
Date 2014-12-4
Genbank Assembly Accession GCA_000792515.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source urinary tract infection
Latitude Longitude None
Molecule Count N/A
CDS Count 6,705
Refseq Category na
Seq Rel Date 2014/12/04
Spanned Gaps 50
Species Taxid 287
SSU Count 1
Submitter AstraZeneca
Taxid 287
Total Gap Length 4975
Translation Table 11
tRNA Count (total) 55
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JTPB00000000.1