Pseudomonas aeruginosa
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas aeruginosa
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas aeruginosa
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas aeruginosa group; s__Pseudomonas aeruginosa
NCBI Strain Identifiers AZPAE15050
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001457615.1)
Genome Characteristics
CheckM Completeness 98.93%
CheckM Contamination 0.28%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 224
N50 Contigs 96,612 bp
Longest Contig 293,878 bp
Scaffold Count 153
N50 Scaffolds 116,134 bp
Longest Scaffold 301,653 bp
Genome Size 6,901,290 bp
Protein Count 6,507
Coding Density 89.02%
GC Percentage 65.84%
Ambiguous Bases 37
GTDB representative GCA_001457615.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name AZPAE15050
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03105747
Country China: Hong Kong
Date 2014-12-4
Genbank Assembly Accession GCA_000791665.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source itra-abdominal tract infection
Latitude Longitude None
Molecule Count N/A
CDS Count 6,673
Refseq Category na
Seq Rel Date 2014/12/04
Spanned Gaps 71
Species Taxid 287
SSU Count 1
Submitter AstraZeneca
Taxid 287
Total Gap Length 6350
Translation Table 11
tRNA Count (total) 61
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JTMW00000000.1