Pseudomonas aeruginosa
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas aeruginosa
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas aeruginosa
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas aeruginosa group; s__Pseudomonas aeruginosa
NCBI Strain Identifiers AZPAE14948
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001457615.1)
Genome Characteristics
CheckM Completeness 99.18%
CheckM Contamination 0.43%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 210
N50 Contigs 117,471 bp
Longest Contig 401,069 bp
Scaffold Count 147
N50 Scaffolds 122,103 bp
Longest Scaffold 458,396 bp
Genome Size 6,828,755 bp
Protein Count 6,328
Coding Density 88.92%
GC Percentage 65.91%
Ambiguous Bases 26
GTDB representative GCA_001457615.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name AZPAE14948
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03105646
Country Argentina: Victoria
Date 2014-12-4
Genbank Assembly Accession GCA_000791485.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source itra-abdominal tract infection
Latitude Longitude None
Molecule Count N/A
CDS Count 6,530
Refseq Category na
Seq Rel Date 2014/12/04
Spanned Gaps 63
Species Taxid 287
SSU Count 1
Submitter AstraZeneca
Taxid 287
Total Gap Length 5144
Translation Table 11
tRNA Count (total) 54
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JTQT00000000.1