Pseudomonas aeruginosa
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas aeruginosa
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas aeruginosa
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas aeruginosa group; s__Pseudomonas aeruginosa
NCBI Strain Identifiers AZPAE14883
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001457615.1)
Genome Characteristics
CheckM Completeness 99.0%
CheckM Contamination 0.6%
CheckM Strain Heterogeneity 33.33
5S Count 2
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 294
N50 Contigs 220,365 bp
Longest Contig 489,428 bp
Scaffold Count 161
N50 Scaffolds 220,365 bp
Longest Scaffold 489,428 bp
Genome Size 6,309,393 bp
Protein Count 5,863
Coding Density 88.97%
GC Percentage 66.53%
Ambiguous Bases 22
GTDB representative GCA_001457615.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name AZPAE14883
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03105582
Country Croatia: Split
Date 2014-12-4
Genbank Assembly Accession GCA_000790645.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source respiratory tract infection
Latitude Longitude None
Molecule Count N/A
CDS Count 5,991
Refseq Category na
Seq Rel Date 2014/12/04
Spanned Gaps 133
Species Taxid 287
SSU Count 2
Submitter AstraZeneca
Taxid 287
Total Gap Length 10258
Translation Table 11
tRNA Count (total) 56
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JTTF00000000.1