Pseudomonas aeruginosa
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas aeruginosa
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas aeruginosa
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas aeruginosa group; s__Pseudomonas aeruginosa
NCBI Strain Identifiers AZPAE14858
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001457615.1)
Genome Characteristics
CheckM Completeness 98.25%
CheckM Contamination 0.48%
CheckM Strain Heterogeneity 25.0
5S Count 2
16S Count 3
23S Count 1
tRNA Count 20
Contig Count 200
N50 Contigs 108,090 bp
Longest Contig 336,140 bp
Scaffold Count 169
N50 Scaffolds 108,324 bp
Longest Scaffold 336,426 bp
Genome Size 6,660,551 bp
Protein Count 6,282
Coding Density 89.18%
GC Percentage 65.97%
Ambiguous Bases 83
GTDB representative GCA_001457615.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name AZPAE14858
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03105557
Country France: Paris
Date 2014-12-4
Genbank Assembly Accession GCA_000790025.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source itra-abdominal tract infection
Latitude Longitude None
Molecule Count N/A
CDS Count 6,473
Refseq Category na
Seq Rel Date 2014/12/04
Spanned Gaps 31
Species Taxid 287
SSU Count 3
Submitter AstraZeneca
Taxid 287
Total Gap Length 1808
Translation Table 11
tRNA Count (total) 58
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JTUE00000000.1