Pseudomonas aeruginosa
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas aeruginosa
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas aeruginosa
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas aeruginosa group; s__Pseudomonas aeruginosa
NCBI Strain Identifiers AZPAE15049
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001457615.1)
Genome Characteristics
CheckM Completeness 98.2%
CheckM Contamination 0.27%
CheckM Strain Heterogeneity 50.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 160
N50 Contigs 140,429 bp
Longest Contig 402,547 bp
Scaffold Count 101
N50 Scaffolds 165,630 bp
Longest Scaffold 494,619 bp
Genome Size 6,259,893 bp
Protein Count 5,781
Coding Density 89.57%
GC Percentage 66.50%
Ambiguous Bases 21
GTDB representative GCA_001457615.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name AZPAE15049
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03105746
Country Germany: Munchen
Date 2014-12-4
Genbank Assembly Accession GCA_000789485.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source urinary tract infection
Latitude Longitude None
Molecule Count N/A
CDS Count 5,918
Refseq Category na
Seq Rel Date 2014/12/04
Spanned Gaps 59
Species Taxid 287
SSU Count 1
Submitter AstraZeneca
Taxid 287
Total Gap Length 4640
Translation Table 11
tRNA Count (total) 51
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JTMX00000000.1