Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae
NCBI Strain Identifiers 2012HC-19
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001471585.2)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.12%
CheckM Strain Heterogeneity 50.0
5S Count 2
16S Count 5
23S Count 1
tRNA Count 18
Contig Count 154
N50 Contigs 89,270 bp
Longest Contig 246,274 bp
Scaffold Count 117
N50 Scaffolds 197,802 bp
Longest Scaffold 536,400 bp
Genome Size 4,010,541 bp
Protein Count 3,572
Coding Density 87.50%
GC Percentage 47.51%
Ambiguous Bases N/A
GTDB representative GCA_001471585.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM78909v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03104876
Country Haiti: Cholera Treatment Center; Gressier
Date 2014-12-03
Genbank Assembly Accession GCA_000789095.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Stool; Clinical
Latitude Longitude None
Molecule Count N/A
CDS Count 3,762
Refseq Category na
Seq Rel Date 2014/12/03
Spanned Gaps 37
Species Taxid 666
SSU Count 6
Submitter University of Florida
Taxid 666
Total Gap Length 1238
Translation Table 11
tRNA Count (total) 68
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JSTU00000000.1