Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae
NCBI Strain Identifiers 2012Env-32
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001471585.2)
Genome Characteristics
CheckM Completeness 99.83%
CheckM Contamination 0.1%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 19
Contig Count 153
N50 Contigs 74,748 bp
Longest Contig 245,896 bp
Scaffold Count 97
N50 Scaffolds 191,868 bp
Longest Scaffold 418,049 bp
Genome Size 3,966,360 bp
Protein Count 3,508
Coding Density 87.37%
GC Percentage 47.62%
Ambiguous Bases N/A
GTDB representative GCA_001471585.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM78867v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03104883
Country Haiti: Four-au-chaux
Date 2014-12-3
Genbank Assembly Accession GCA_000788675.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Water; Environmental
Latitude Longitude None
Molecule Count N/A
CDS Count 3,668
Refseq Category na
Seq Rel Date 2014/12/03
Spanned Gaps 56
Species Taxid 666
SSU Count 2
Submitter University of Florida
Taxid 666
Total Gap Length 2077
Translation Table 11
tRNA Count (total) 78
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JSTF00000000.1