Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae
NCBI Strain Identifiers 2012Env-2
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001471585.2)
Genome Characteristics
CheckM Completeness 99.49%
CheckM Contamination 0.19%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 2
tRNA Count 19
Contig Count 187
N50 Contigs 73,777 bp
Longest Contig 166,443 bp
Scaffold Count 121
N50 Scaffolds 167,963 bp
Longest Scaffold 288,886 bp
Genome Size 3,997,495 bp
Protein Count 3,591
Coding Density 86.99%
GC Percentage 47.61%
Ambiguous Bases N/A
GTDB representative GCA_001471585.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM78849v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03104881
Country Haiti: Lassalle
Date 2014-12-3
Genbank Assembly Accession GCA_000788495.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Water; Environmental
Latitude Longitude None
Molecule Count N/A
CDS Count 3,775
Refseq Category na
Seq Rel Date 2014/12/03
Spanned Gaps 66
Species Taxid 666
SSU Count 3
Submitter University of Florida
Taxid 666
Total Gap Length 2857
Translation Table 11
tRNA Count (total) 85
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JSTD00000000.1