Streptacidiphilus melanogenes
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Streptomycetales; f__Streptomycetaceae; g__Streptacidiphilus; s__Streptacidiphilus melanogenes
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Streptomycetales; f__Streptomycetaceae; g__Streptacidiphilus; s__Streptacidiphilus melanogenes
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Streptomycetales; f__Streptomycetaceae; g__Streptacidiphilus; s__Streptacidiphilus melanogenes
NCBI Strain Identifiers NBRC 103184
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (1 genome in species cluster)
Genome Characteristics
CheckM Completeness 98.84%
CheckM Contamination 2.63%
CheckM Strain Heterogeneity 16.67
5S Count 1
16S Count 1
23S Count 2
tRNA Count 20
Contig Count 282
N50 Contigs 54,215 bp
Longest Contig 205,310 bp
Scaffold Count 107
N50 Scaffolds 144,573 bp
Longest Scaffold 432,548 bp
Genome Size 8,771,919 bp
Protein Count 7,960
Coding Density 86.80%
GC Percentage 72.01%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM78783v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMD00022876
Country None
Date 2014-11-20
Genbank Assembly Accession GCA_000787835.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 7,872
Refseq Category representative genome
Seq Rel Date 2014/11/20
Spanned Gaps 175
Species Taxid 411235
SSU Count 1
Submitter National Institute of Technology and Evaluation Biological Resource Center
Taxid 411235
Total Gap Length 46928
Translation Table 11
tRNA Count (total) 74
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master BBPP00000000.1