Sphingomonas parapaucimobilis
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Sphingomonadales; f__Sphingomonadaceae; g__Sphingomonas; s__Sphingomonas parapaucimobilis
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Sphingomonadales; f__Sphingomonadaceae; g__Sphingomonas; s__Sphingomonas parapaucimobilis
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Sphingomonadales; f__Sphingomonadaceae; g__Sphingomonas; s__Sphingomonas parapaucimobilis; x__Sphingomonas parapaucimobilis NBRC 15100
NCBI Strain Identifiers NBRC 15100
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (2 genomes in species cluster)
Genome Characteristics
CheckM Completeness 99.59%
CheckM Contamination 0.87%
CheckM Strain Heterogeneity 0.0
5S Count 3
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 127
N50 Contigs 68,960 bp
Longest Contig 181,810 bp
Scaffold Count 127
N50 Scaffolds 68,960 bp
Longest Scaffold 181,810 bp
Genome Size 3,994,522 bp
Protein Count 3,698
Coding Density 89.79%
GC Percentage 66.38%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Contig
Assembly Name ASM78771v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMD00018690
Country None
Date 2014-11-17
Genbank Assembly Accession GCA_000787715.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 3,621
Refseq Category na
Seq Rel Date 2014/11/17
Spanned Gaps 0
Species Taxid 28213
SSU Count 1
Submitter National Institute of Technology and Evaluation
Taxid 1219049
Total Gap Length 0
Translation Table 11
tRNA Count (total) 53
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master BBPI00000000.1