Aeromonas salmonicida
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Aeromonadaceae; g__Aeromonas; s__Aeromonas salmonicida
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Aeromonadales; f__Aeromonadaceae; g__Aeromonas; s__Aeromonas salmonicida
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Aeromonadales; f__Aeromonadaceae; g__Aeromonas; s__Aeromonas salmonicida; sb__Aeromonas salmonicida subsp. salmonicida
NCBI Strain Identifiers 2004-05MF26
GTDB Type Material Designation not type material
GTDB Representative of Species False
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.58%
CheckM Strain Heterogeneity 100.0
5S Count 9
16S Count 5
23S Count 4
tRNA Count 20
Contig Count 126
N50 Contigs 119,364 bp
Longest Contig 382,276 bp
Scaffold Count 126
N50 Scaffolds 119,364 bp
Longest Scaffold 382,276 bp
Genome Size 5,021,090 bp
Protein Count 4,961
Coding Density 86.53%
GC Percentage 58.25%
Ambiguous Bases 0
GTDB representative GCF_001643305.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM78680v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03120845
Country Canada: New Brunswick
Date 2014-11-25
Genbank Assembly Accession GCA_000786805.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source sick fish
Latitude Longitude None
Molecule Count 0
Protein Count 4,813
Refseq Category na
Seq Rel Date 2014/11/25
Spanned Gaps 0
Species Taxid 645
SSU Count 13
Submitter Universite Laval
Taxid 29491
Total Gap Length 0
Translation Table 11
tRNA Count (total) 105
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JRYW00000000.1