Legionella pneumophila
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Legionellales; f__Legionellaceae; g__Legionella; s__Legionella pneumophila
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Legionellales; f__Legionellaceae; g__Legionella; s__Legionella pneumophila
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Legionellales; f__Legionellaceae; g__Legionella; s__Legionella pneumophila
NCBI Strain Identifiers D-5864
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000008485.1)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.19%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 19
Contig Count 35
N50 Contigs 309,697 bp
Longest Contig 526,767 bp
Scaffold Count 35
N50 Scaffolds 309,697 bp
Longest Scaffold 526,767 bp
Genome Size 3,390,367 bp
Protein Count 3,070
Coding Density 88.77%
GC Percentage 38.24%
Ambiguous Bases N/A
GTDB representative GCA_000008485.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM78590v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03071880
Country USA: Arizona
Date 2014-11-21
Genbank Assembly Accession GCA_000785905.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Alveolar lavage specimen
Latitude Longitude None
Molecule Count N/A
CDS Count 3,060
Refseq Category na
Seq Rel Date 2014/11/21
Spanned Gaps 0
Species Taxid 446
SSU Count 1
Submitter Centers of Disease Control
Taxid 446
Total Gap Length 0
Translation Table 11
tRNA Count (total) 41
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JRMJ00000000.1