Vibrio sinaloensis
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Vibrionaceae; g__Vibrio; s__Vibrio sinaloensis
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio caribbeanicus
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio caribbeanicus
NCBI Strain Identifiers T14
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000808535.1)
Genome Characteristics
CheckM Completeness 99.66%
CheckM Contamination 0.83%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 1
23S Count 1
tRNA Count 19
Contig Count 51
N50 Contigs 498,933 bp
Longest Contig 647,541 bp
Scaffold Count 51
N50 Scaffolds 498,933 bp
Longest Scaffold 647,541 bp
Genome Size 4,568,683 bp
Protein Count 4,088
Coding Density 88.85%
GC Percentage 46.15%
Ambiguous Bases N/A
GTDB representative GCA_000808535.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM78557v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03113153
Country Malaysia
Date 2014-11-19
Genbank Assembly Accession GCA_000785575.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source marine water
Latitude Longitude None
Molecule Count N/A
CDS Count 4,115
Refseq Category na
Seq Rel Date 2014/11/19
Spanned Gaps 0
Species Taxid 701175
SSU Count 7
Submitter University of Malaya
Taxid 701175
Total Gap Length 0
Translation Table 11
tRNA Count (total) 76
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JRWR00000000.1