Pseudomonas_E brassicacearum
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas_E; s__Pseudomonas_E brassicacearum
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas brassicacearum
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas brassicacearum; x__Pseudomonas brassicacearum PP1_210F
NCBI Strain Identifiers PP1_210F
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000194805.1)
Genome Characteristics
CheckM Completeness 99.45%
CheckM Contamination 2.6%
CheckM Strain Heterogeneity 90.0
5S Count 5
16S Count 5
23S Count 5
tRNA Count 20
Contig Count 51
N50 Contigs 210,148 bp
Longest Contig 596,870 bp
Scaffold Count 5
N50 Scaffolds 4,701,597 bp
Longest Scaffold 4,701,597 bp
Genome Size 6,771,617 bp
Protein Count 6,057
Coding Density 86.91%
GC Percentage 60.93%
Ambiguous Bases N/A
GTDB representative GCA_000194805.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name PseuBrassicaPP1_210F_1.0
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03196957
Country France: Pas De Calais
Date 2014-11-18
Genbank Assembly Accession GCA_000785375.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source potato rhizosphere
Latitude Longitude None
Molecule Count N/A
CDS Count 6,075
Refseq Category na
Seq Rel Date 2014/11/18
Spanned Gaps 46
Species Taxid 930166
SSU Count 5
Submitter CNRS - UPR2355
Taxid 1403314
Total Gap Length 55835
Translation Table 11
tRNA Count (total) 66
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AYJR00000000.1