Escherichia coli_D
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli_D
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers ECONIH1
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000026325.2)
Genome Characteristics
CheckM Completeness 99.62%
CheckM Contamination 0.66%
CheckM Strain Heterogeneity 7.14
5S Count 7
16S Count 7
23S Count 7
tRNA Count 20
Contig Count 4
N50 Contigs 5,310,511 bp
Longest Contig 5,310,511 bp
Scaffold Count 4
N50 Scaffolds 5,310,511 bp
Longest Scaffold 5,310,511 bp
Genome Size 5,559,642 bp
Protein Count 5,278
Coding Density 87.74%
GC Percentage 50.41%
Ambiguous Bases N/A
GTDB representative GCA_000026325.2
GTDB representative of species False
NCBI Metadata
Assembly Level Complete Genome
Assembly Name ASM78492v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02709589
Country USA
Date 2014-11-17
Genbank Assembly Accession GCA_000784925.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source perirectal swab
Latitude Longitude None
Molecule Count 4
CDS Count 5,708
Refseq Category na
Seq Rel Date 2014/11/17
Spanned Gaps 0
Species Taxid 562
SSU Count 7
Submitter NIH
Taxid 562
Total Gap Length 0
Translation Table 11
tRNA Count (total) 90
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master None