Dickeya sp000784735
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Dickeya; s__Dickeya sp000784735
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Pectobacteriaceae; g__Dickeya; s__
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Pectobacteriaceae; g__Dickeya; s__Dickeya sp. 2B12
NCBI Strain Identifiers 2B12
GTDB Type Material Designation not type material
GTDB Representative of Species True (3 genomes in species cluster)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.33%
CheckM Strain Heterogeneity 0.0
5S Count 5
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 77
N50 Contigs 169,840 bp
Longest Contig 508,288 bp
Scaffold Count 77
N50 Scaffolds 169,840 bp
Longest Scaffold 508,288 bp
Genome Size 4,349,790 bp
Protein Count 3,881
Coding Density 86.25%
GC Percentage 54.46%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Contig
Assembly Name ASM78473v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03145754
Country Malaysia
Date 2014-11-17
Genbank Assembly Accession GCA_000784735.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source lake water
Latitude Longitude None
Molecule Count N/A
CDS Count 3,907
Refseq Category na
Seq Rel Date 2014/11/17
Spanned Gaps 0
Species Taxid 1577887
SSU Count 2
Submitter University of Malaya
Taxid 1577887
Total Gap Length 0
Translation Table 11
tRNA Count (total) 67
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JSYG00000000.1