Dickeya chrysanthemi
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Dickeya; s__Dickeya chrysanthemi
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Pectobacteriaceae; g__Dickeya; s__Dickeya chrysanthemi
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Pectobacteriaceae; g__Dickeya; s__Dickeya chrysanthemi
NCBI Strain Identifiers L11
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000406105.1)
Genome Characteristics
CheckM Completeness 99.92%
CheckM Contamination 0.28%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 144
N50 Contigs 95,075 bp
Longest Contig 382,940 bp
Scaffold Count 144
N50 Scaffolds 95,075 bp
Longest Scaffold 382,940 bp
Genome Size 4,767,879 bp
Protein Count 4,267
Coding Density 86.00%
GC Percentage 54.32%
Ambiguous Bases N/A
GTDB representative GCA_000406105.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM78472v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03145752
Country Malaysia
Date 2014-11-17
Genbank Assembly Accession GCA_000784725.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source lake water
Latitude Longitude None
Molecule Count N/A
CDS Count 4,271
Refseq Category na
Seq Rel Date 2014/11/17
Spanned Gaps 0
Species Taxid 556
SSU Count 4
Submitter University of Malaya
Taxid 556
Total Gap Length 0
Translation Table 11
tRNA Count (total) 66
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JSYH00000000.1