Lacticaseibacillus rhamnosus
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lacticaseibacillus; s__Lacticaseibacillus rhamnosus
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus rhamnosus
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus rhamnosus; x__Lactobacillus rhamnosus L31
NCBI Strain Identifiers L31
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000615245.1)
Genome Characteristics
CheckM Completeness 99.46%
CheckM Contamination 0.54%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 19
Contig Count 67
N50 Contigs 91,772 bp
Longest Contig 290,053 bp
Scaffold Count 67
N50 Scaffolds 91,772 bp
Longest Scaffold 290,053 bp
Genome Size 2,826,754 bp
Protein Count 2,686
Coding Density 85.37%
GC Percentage 46.73%
Ambiguous Bases N/A
GTDB representative GCA_000615245.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name L31
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02324553
Country Thailand: Bangkok
Date 2014-11-17
Genbank Assembly Accession GCA_000784405.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source infant feces
Latitude Longitude None
Molecule Count N/A
CDS Count 2,823
Refseq Category na
Seq Rel Date 2014/11/17
Spanned Gaps 0
Species Taxid 47715
SSU Count 1
Submitter Baylor College of Medicine
Taxid 1390386
Total Gap Length 0
Translation Table 11
tRNA Count (total) 45
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AYTQ00000000.1