Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers blood-08-1203
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_003697165.2)
Genome Characteristics
CheckM Completeness 99.67%
CheckM Contamination 0.09%
CheckM Strain Heterogeneity 0.0
5S Count 7
16S Count 4
23S Count 9
tRNA Count 20
Contig Count 199
N50 Contigs 77,623 bp
Longest Contig 264,692 bp
Scaffold Count 107
N50 Scaffolds 165,696 bp
Longest Scaffold 371,410 bp
Genome Size 5,227,963 bp
Protein Count 4,990
Coding Density 87.33%
GC Percentage 50.72%
Ambiguous Bases 137
GTDB representative GCA_003697165.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM78263v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02801821
Country USA: WA
Date 2014-11-13
Genbank Assembly Accession GCA_000782635.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source blood from patient with bacteremia
Latitude Longitude None
Molecule Count N/A
CDS Count 5,182
Refseq Category na
Seq Rel Date 2014/11/13
Spanned Gaps 92
Species Taxid 562
SSU Count 4
Submitter University of Washington
Taxid 562
Total Gap Length 9200
Translation Table 11
tRNA Count (total) 79
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JSSK00000000.1