Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers blood-09-0409
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_003697165.2)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.04%
CheckM Strain Heterogeneity 0.0
5S Count 3
16S Count 5
23S Count 6
tRNA Count 20
Contig Count 76
N50 Contigs 159,299 bp
Longest Contig 501,787 bp
Scaffold Count 36
N50 Scaffolds 330,554 bp
Longest Scaffold 704,927 bp
Genome Size 4,929,387 bp
Protein Count 4,557
Coding Density 87.92%
GC Percentage 50.46%
Ambiguous Bases 63
GTDB representative GCA_003697165.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM78221v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02801842
Country USA: WA
Date 2014-11-13
Genbank Assembly Accession GCA_000782215.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source blood from patient with bacteremia
Latitude Longitude None
Molecule Count N/A
CDS Count 4,943
Refseq Category na
Seq Rel Date 2014/11/13
Spanned Gaps 40
Species Taxid 562
SSU Count 7
Submitter University of Washington
Taxid 562
Total Gap Length 3912
Translation Table 11
tRNA Count (total) 72
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JSRP00000000.1