Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers blood-09-0767
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_003697165.2)
Genome Characteristics
CheckM Completeness 99.25%
CheckM Contamination 0.72%
CheckM Strain Heterogeneity 60.0
5S Count 4
16S Count 5
23S Count 8
tRNA Count 19
Contig Count 194
N50 Contigs 56,659 bp
Longest Contig 312,567 bp
Scaffold Count 53
N50 Scaffolds 353,800 bp
Longest Scaffold 685,368 bp
Genome Size 4,892,486 bp
Protein Count 4,626
Coding Density 87.57%
GC Percentage 50.64%
Ambiguous Bases 154
GTDB representative GCA_003697165.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM78203v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02801851
Country USA: Pacific Northwest
Date 2014-11-13
Genbank Assembly Accession GCA_000782035.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source blood from patient with bacteremia
Latitude Longitude None
Molecule Count N/A
CDS Count 5,041
Refseq Category na
Seq Rel Date 2014/11/13
Spanned Gaps 141
Species Taxid 562
SSU Count 5
Submitter University of Washington
Taxid 562
Total Gap Length 13843
Translation Table 11
tRNA Count (total) 70
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JSRG00000000.1