Escherichia coli_D
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli_D
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers blood-10-0541
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000026325.2)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.09%
CheckM Strain Heterogeneity 0.0
5S Count 4
16S Count 8
23S Count 6
tRNA Count 20
Contig Count 178
N50 Contigs 109,207 bp
Longest Contig 382,546 bp
Scaffold Count 137
N50 Scaffolds 109,207 bp
Longest Scaffold 382,557 bp
Genome Size 5,450,342 bp
Protein Count 5,146
Coding Density 87.52%
GC Percentage 50.65%
Ambiguous Bases 143
GTDB representative GCA_000026325.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM78167v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02801869
Country USA: Pacific Northwest
Date 2014-11-13
Genbank Assembly Accession GCA_000781675.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source blood from patient with bacteremia
Latitude Longitude None
Molecule Count N/A
CDS Count 5,602
Refseq Category na
Seq Rel Date 2014/11/13
Spanned Gaps 41
Species Taxid 562
SSU Count 9
Submitter University of Washington
Taxid 562
Total Gap Length 3849
Translation Table 11
tRNA Count (total) 83
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JSQO00000000.1