Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers upec-116
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_003697165.2)
Genome Characteristics
CheckM Completeness 99.37%
CheckM Contamination 0.48%
CheckM Strain Heterogeneity 0.0
5S Count 3
16S Count 3
23S Count 5
tRNA Count 19
Contig Count 153
N50 Contigs 68,488 bp
Longest Contig 206,720 bp
Scaffold Count 58
N50 Scaffolds 161,051 bp
Longest Scaffold 333,136 bp
Genome Size 4,929,087 bp
Protein Count 4,643
Coding Density 86.95%
GC Percentage 50.64%
Ambiguous Bases 99
GTDB representative GCA_003697165.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM78119v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02801927
Country USA: WA
Date 2014-11-13
Genbank Assembly Accession GCA_000781195.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source patient with urinary tract infection
Latitude Longitude None
Molecule Count N/A
CDS Count 5,011
Refseq Category na
Seq Rel Date 2014/11/13
Spanned Gaps 95
Species Taxid 562
SSU Count 3
Submitter University of Washington
Taxid 562
Total Gap Length 9500
Translation Table 11
tRNA Count (total) 54
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JSOK00000000.1