Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers upec-120
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_003697165.2)
Genome Characteristics
CheckM Completeness 99.4%
CheckM Contamination 0.08%
CheckM Strain Heterogeneity 0.0
5S Count 5
16S Count 5
23S Count 7
tRNA Count 19
Contig Count 200
N50 Contigs 86,572 bp
Longest Contig 235,396 bp
Scaffold Count 125
N50 Scaffolds 154,636 bp
Longest Scaffold 483,246 bp
Genome Size 5,328,103 bp
Protein Count 5,186
Coding Density 87.35%
GC Percentage 50.53%
Ambiguous Bases 146
GTDB representative GCA_003697165.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM78109v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02801932
Country USA: WA
Date 2014-11-13
Genbank Assembly Accession GCA_000781095.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source patient with urinary tract infection
Latitude Longitude None
Molecule Count N/A
CDS Count 5,600
Refseq Category na
Seq Rel Date 2014/11/13
Spanned Gaps 75
Species Taxid 562
SSU Count 5
Submitter University of Washington
Taxid 562
Total Gap Length 7331
Translation Table 11
tRNA Count (total) 60
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JSOF00000000.1