Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers upec-150
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_003697165.2)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.19%
CheckM Strain Heterogeneity 30.0
5S Count 4
16S Count 2
23S Count 6
tRNA Count 19
Contig Count 106
N50 Contigs 151,591 bp
Longest Contig 666,368 bp
Scaffold Count 65
N50 Scaffolds 318,850 bp
Longest Scaffold 721,686 bp
Genome Size 4,897,490 bp
Protein Count 4,536
Coding Density 88.07%
GC Percentage 50.56%
Ambiguous Bases 21
GTDB representative GCA_003697165.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM78041v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02801965
Country USA: WA
Date 2014-11-13
Genbank Assembly Accession GCA_000780415.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source patient with urinary tract infection
Latitude Longitude None
Molecule Count N/A
CDS Count 4,918
Refseq Category na
Seq Rel Date 2014/11/13
Spanned Gaps 41
Species Taxid 562
SSU Count 2
Submitter University of Washington
Taxid 562
Total Gap Length 4100
Translation Table 11
tRNA Count (total) 53
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JSMZ00000000.1