Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers upec-151
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 99.18%
CheckM Contamination 0.41%
CheckM Strain Heterogeneity 50.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 16
Contig Count 385
N50 Contigs 25,133 bp
Longest Contig 124,231 bp
Scaffold Count 102
N50 Scaffolds 111,331 bp
Longest Scaffold 253,097 bp
Genome Size 4,851,259 bp
Protein Count 4,519
Coding Density 86.78%
GC Percentage 50.80%
Ambiguous Bases 145
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM78035v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02801966
Country USA: WA
Date 2014-11-13
Genbank Assembly Accession GCA_000780355.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source patient with urinary tract infection
Latitude Longitude None
Molecule Count N/A
CDS Count 5,014
Refseq Category na
Seq Rel Date 2014/11/13
Spanned Gaps 283
Species Taxid 562
SSU Count 1
Submitter University of Washington
Taxid 562
Total Gap Length 27699
Translation Table 11
tRNA Count (total) 38
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JSMY00000000.1