Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers upec-156
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_003697165.2)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.22%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 4
23S Count 3
tRNA Count 19
Contig Count 160
N50 Contigs 92,882 bp
Longest Contig 218,893 bp
Scaffold Count 83
N50 Scaffolds 218,893 bp
Longest Scaffold 380,178 bp
Genome Size 5,159,989 bp
Protein Count 4,803
Coding Density 87.80%
GC Percentage 50.48%
Ambiguous Bases 71
GTDB representative GCA_003697165.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM78023v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02801971
Country USA: WA
Date 2014-11-13
Genbank Assembly Accession GCA_000780235.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source patient with urinary tract infection
Latitude Longitude None
Molecule Count N/A
CDS Count 5,030
Refseq Category na
Seq Rel Date 2014/11/13
Spanned Gaps 77
Species Taxid 562
SSU Count 4
Submitter University of Washington
Taxid 562
Total Gap Length 7448
Translation Table 11
tRNA Count (total) 53
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JSMU00000000.1