Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers upec-176
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_003697165.2)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 2.75%
CheckM Strain Heterogeneity 85.71
5S Count 4
16S Count 5
23S Count 5
tRNA Count 20
Contig Count 144
N50 Contigs 112,318 bp
Longest Contig 276,139 bp
Scaffold Count 88
N50 Scaffolds 192,769 bp
Longest Scaffold 371,082 bp
Genome Size 5,450,951 bp
Protein Count 5,184
Coding Density 87.86%
GC Percentage 50.86%
Ambiguous Bases 114
GTDB representative GCA_003697165.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM77989v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02801993
Country USA: WA
Date 2014-11-13
Genbank Assembly Accession GCA_000779895.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source patient with urinary tract infection
Latitude Longitude None
Molecule Count N/A
CDS Count 5,637
Refseq Category na
Seq Rel Date 2014/11/13
Spanned Gaps 56
Species Taxid 562
SSU Count 5
Submitter University of Washington
Taxid 562
Total Gap Length 5519
Translation Table 11
tRNA Count (total) 63
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JSMG00000000.1