Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers upec-184
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_003697165.2)
Genome Characteristics
CheckM Completeness 99.91%
CheckM Contamination 0.31%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 1
23S Count 1
tRNA Count 19
Contig Count 107
N50 Contigs 138,649 bp
Longest Contig 383,687 bp
Scaffold Count 60
N50 Scaffolds 351,437 bp
Longest Scaffold 831,129 bp
Genome Size 5,115,556 bp
Protein Count 4,780
Coding Density 88.22%
GC Percentage 50.45%
Ambiguous Bases 19
GTDB representative GCA_003697165.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM77971v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02802002
Country USA: WA
Date 2014-11-13
Genbank Assembly Accession GCA_000779715.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source patient with urinary tract infection
Latitude Longitude None
Molecule Count N/A
CDS Count 4,971
Refseq Category na
Seq Rel Date 2014/11/13
Spanned Gaps 47
Species Taxid 562
SSU Count 1
Submitter University of Washington
Taxid 562
Total Gap Length 4700
Translation Table 11
tRNA Count (total) 48
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JSLZ00000000.1