Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers upec-188
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_003697165.2)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.1%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 4
23S Count 5
tRNA Count 18
Contig Count 97
N50 Contigs 178,696 bp
Longest Contig 521,500 bp
Scaffold Count 58
N50 Scaffolds 345,081 bp
Longest Scaffold 710,319 bp
Genome Size 4,906,476 bp
Protein Count 4,536
Coding Density 87.69%
GC Percentage 50.70%
Ambiguous Bases 48
GTDB representative GCA_003697165.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM77963v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02802006
Country USA: WA
Date 2014-11-13
Genbank Assembly Accession GCA_000779635.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source patient with urinary tract infection
Latitude Longitude None
Molecule Count N/A
CDS Count 4,922
Refseq Category na
Seq Rel Date 2014/11/13
Spanned Gaps 39
Species Taxid 562
SSU Count 4
Submitter University of Washington
Taxid 562
Total Gap Length 3900
Translation Table 11
tRNA Count (total) 51
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JSLV00000000.1