Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers upec-193
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_003697165.2)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.08%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 2
23S Count 4
tRNA Count 19
Contig Count 231
N50 Contigs 113,164 bp
Longest Contig 301,989 bp
Scaffold Count 141
N50 Scaffolds 171,409 bp
Longest Scaffold 415,137 bp
Genome Size 5,315,257 bp
Protein Count 4,977
Coding Density 86.97%
GC Percentage 50.37%
Ambiguous Bases 68
GTDB representative GCA_003697165.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM77954v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02802012
Country USA: WA
Date 2014-11-13
Genbank Assembly Accession GCA_000779545.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source patient with urinary tract infection
Latitude Longitude None
Molecule Count N/A
CDS Count 5,498
Refseq Category na
Seq Rel Date 2014/11/13
Spanned Gaps 90
Species Taxid 562
SSU Count 2
Submitter University of Washington
Taxid 562
Total Gap Length 8913
Translation Table 11
tRNA Count (total) 56
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JSLT00000000.1