Escherichia flexneri
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers blood-10-1362
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 99.56%
CheckM Contamination 0.18%
CheckM Strain Heterogeneity 25.0
5S Count 5
16S Count 2
23S Count 1
tRNA Count 20
Contig Count 139
N50 Contigs 97,319 bp
Longest Contig 288,208 bp
Scaffold Count 99
N50 Scaffolds 144,797 bp
Longest Scaffold 336,902 bp
Genome Size 4,809,692 bp
Protein Count 4,528
Coding Density 88.19%
GC Percentage 50.88%
Ambiguous Bases 20
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM77874v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02801886
Country USA: Pacific Northwest
Date 2014-11-13
Genbank Assembly Accession GCA_000778745.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source blood from patient with bacteremia
Latitude Longitude None
Molecule Count N/A
CDS Count 4,894
Refseq Category na
Seq Rel Date 2014/11/13
Spanned Gaps 40
Species Taxid 562
SSU Count 4
Submitter University of Washington
Taxid 562
Total Gap Length 3581
Translation Table 11
tRNA Count (total) 66
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JSPX00000000.1