Escherichia flexneri
Isolate HQ 5S/16S/23S 16 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers upec-22
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 97.04%
CheckM Contamination 0.68%
CheckM Strain Heterogeneity 27.27
5S Count 2
16S Count 1
23S Count 3
tRNA Count 16
Contig Count 582
N50 Contigs 14,248 bp
Longest Contig 74,321 bp
Scaffold Count 360
N50 Scaffolds 22,546 bp
Longest Scaffold 85,887 bp
Genome Size 4,828,262 bp
Protein Count 4,805
Coding Density 86.73%
GC Percentage 50.63%
Ambiguous Bases 367
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM77863v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02802042
Country USA: WA
Date 2014-11-13
Genbank Assembly Accession GCA_000778635.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source patient with urinary tract infection
Latitude Longitude None
Molecule Count N/A
CDS Count 5,105
Refseq Category na
Seq Rel Date 2014/11/13
Spanned Gaps 222
Species Taxid 562
SSU Count 1
Submitter University of Washington
Taxid 562
Total Gap Length 22200
Translation Table 11
tRNA Count (total) 38
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JSKT00000000.1