Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers upec-230
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_003697165.2)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.08%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 2
23S Count 2
tRNA Count 18
Contig Count 292
N50 Contigs 85,957 bp
Longest Contig 206,932 bp
Scaffold Count 142
N50 Scaffolds 160,946 bp
Longest Scaffold 406,749 bp
Genome Size 5,295,534 bp
Protein Count 4,967
Coding Density 86.86%
GC Percentage 50.38%
Ambiguous Bases 51
GTDB representative GCA_003697165.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM77843v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02802054
Country USA: WA
Date 2014-11-13
Genbank Assembly Accession GCA_000778435.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source patient with urinary tract infection
Latitude Longitude None
Molecule Count N/A
CDS Count 5,242
Refseq Category na
Seq Rel Date 2014/11/13
Spanned Gaps 150
Species Taxid 562
SSU Count 2
Submitter University of Washington
Taxid 562
Total Gap Length 14822
Translation Table 11
tRNA Count (total) 42
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JSKI00000000.1