Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers upec-237
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_003697165.2)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.08%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 2
23S Count 3
tRNA Count 19
Contig Count 215
N50 Contigs 120,515 bp
Longest Contig 346,956 bp
Scaffold Count 123
N50 Scaffolds 204,642 bp
Longest Scaffold 553,926 bp
Genome Size 5,402,128 bp
Protein Count 5,095
Coding Density 87.28%
GC Percentage 50.47%
Ambiguous Bases 27
GTDB representative GCA_003697165.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM77833v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02802061
Country USA: WA
Date 2014-11-13
Genbank Assembly Accession GCA_000778335.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source patient with urinary tract infection
Latitude Longitude None
Molecule Count N/A
CDS Count 5,399
Refseq Category na
Seq Rel Date 2014/11/13
Spanned Gaps 92
Species Taxid 562
SSU Count 2
Submitter University of Washington
Taxid 562
Total Gap Length 9200
Translation Table 11
tRNA Count (total) 49
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JSKC00000000.1